Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs383133 chr19:44467096 A/C 4.55E-6 111 18.28 10.65 1.03 KM Plot
LAML rs3833256 chr19:48244692 C/CG 1.3E-5 106 5.62 22.37 15.17 KM Plot
LAML rs3834977 chr17:28619977 A/AGT 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs3837958 chr19:48255204 CA/C 4.43E-7 107 5.1 21.37 15.17 KM Plot
LAML rs383813 chr17:39330910 C/T 0.000153 111 0 20.25 13.15 KM Plot
LAML rs3839175 chr4:16034720 C/CT 0.000109 110 15.2 16.3 0 KM Plot
LAML rs3839987 chr12:51512637 CT/C 6.2E-5 109 3 16.27 16.77 KM Plot
LAML rs4037396 chr17:30408642 T/C 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs40500 chr19:34012861 C/T 1.68E-5 110 3 9.13 16.77 KM Plot
LAML rs406751 chr16:16361275 G/A 0.00018 109 16.3 11.17 0 KM Plot
LAML rs41290963 chr17:30396390 C/T 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs41290970 chr17:30408987 C/G 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs41312309 chr6:34498328 C/T 6.5E-5 110 16.27 8.1 0 KM Plot
LAML rs4238217 chr13:100088517 G/T 5.58E-5 111 17.23 10.67 1.02 KM Plot
LAML rs4246503 chr1:884815 A/G 0.000158 111 0 15.67 14.22 KM Plot